rigonsallauka
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README.md
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- medical
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- symptom
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- extraction
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- medical
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---
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# Slovenian Medical NER
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## Use
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- **Primary Use Case**: This model is designed to extract medical entities such as symptoms, diagnostic tests, and treatments from clinical text in the Slovenian language.
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- **Applications**: Suitable for healthcare professionals, clinical data analysis, and research into medical text processing.
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- **Supported Entity Types**:
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- `PROBLEM`: Diseases, symptoms, and medical conditions.
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- `TEST`: Diagnostic procedures and laboratory tests.
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- `TREATMENT`: Medications, therapies, and other medical interventions.
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## Training Data
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- **Data Sources**: Annotated datasets, including clinical data and translations of English medical text into Slovenian.
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- **Data Augmentation**: The training dataset underwent data augmentation techniques to improve the model's ability to generalize to different text structures.
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- **Dataset Split**:
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- **Training Set**: 80%
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- **Validation Set**: 10%
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- **Test Set**: 10%
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## Model Training
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- **Training Configuration**:
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- **Optimizer**: AdamW
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- **Learning Rate**: 3e-5
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- **Batch Size**: 64
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- **Epochs**: 200
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- **Loss Function**: Focal Loss to handle class imbalance
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- **Frameworks**: PyTorch, Hugging Face Transformers, SimpleTransformers
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## How to Use
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You can easily use this model with the Hugging Face `transformers` library. Here's an example of how to load and use the model for inference:
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```python
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from transformers import AutoTokenizer, AutoModelForTokenClassification
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import torch
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model_name = "rigonsallauka/slovenian_medical_ner"
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# Load the tokenizer and model
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tokenizer = AutoTokenizer.from_pretrained(model_name)
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model = AutoModelForTokenClassification.from_pretrained(model_name)
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# Sample text for inference
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text = "Pacient se je pritoževal zaradi hudih glavobolov in slabosti, ki sta trajala dva dni."
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# Tokenize the input text
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inputs = tokenizer(text, return_tensors="pt")
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