Training in progress, epoch 1

model.safetensors

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:fd372fbe4ff8318832630436b56ab4058440d05fa18bcfe32aa6ad168d62857f
+oid sha256:9b01ad580019923a502950e248eb87595b2393f24cd36ce13c0d0be24dcd6715
 size 437967876

run-0/checkpoint-4/config.json

@@ -0,0 +1,40 @@
+{
+  "_name_or_path": "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract",
+  "architectures": [
+    "BertForSequenceClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "LABEL_0",
+    "1": "LABEL_1",
+    "2": "LABEL_2",
+    "3": "LABEL_3",
+    "4": "LABEL_4"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
+    "LABEL_0": 0,
+    "LABEL_1": 1,
+    "LABEL_2": 2,
+    "LABEL_3": 3,
+    "LABEL_4": 4
+  },
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "problem_type": "single_label_classification",
+  "torch_dtype": "float32",
+  "transformers_version": "4.36.2",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 30522
+}

run-0/checkpoint-4/model.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9b01ad580019923a502950e248eb87595b2393f24cd36ce13c0d0be24dcd6715
+size 437967876

run-0/checkpoint-4/optimizer.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ea1356ee97aada04d67a9d4baad9fce62e1fb9c8267163eea56b932ea612f02c
+size 876056826

run-0/checkpoint-4/rng_state.pth

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:862ea3871f0ce7e486704d404e09fd74e8dc9b1b155a57bbdc2916276de20cbc
+size 14308

run-0/checkpoint-4/scheduler.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a87c4d9c657909328b9a92b69c95c65b4e541a45f4d8df4341b556f429d4a9b4
+size 1064

run-0/checkpoint-4/special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

run-0/checkpoint-4/tokenizer_config.json

@@ -0,0 +1,57 @@
+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "[UNK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "[CLS]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "[SEP]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "4": {
+      "content": "[MASK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": true,
+  "mask_token": "[MASK]",
+  "model_max_length": 1000000000000000019884624838656,
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}

run-0/checkpoint-4/trainer_state.json

@@ -0,0 +1,35 @@
+{
+  "best_metric": 0.5012987012987012,
+  "best_model_checkpoint": "BiomedNLP-CIViC-evidence-level-finetuned/run-0/checkpoint-4",
+  "epoch": 1.0,
+  "eval_steps": 500,
+  "global_step": 4,
+  "is_hyper_param_search": true,
+  "is_local_process_zero": true,
+  "is_world_process_zero": true,
+  "log_history": [
+    {
+      "epoch": 1.0,
+      "eval_f1": 0.5012987012987012,
+      "eval_loss": 1.4629722833633423,
+      "eval_runtime": 3.0243,
+      "eval_samples_per_second": 127.303,
+      "eval_steps_per_second": 8.266,
+      "step": 4
+    }
+  ],
+  "logging_steps": 500,
+  "max_steps": 8,
+  "num_input_tokens_seen": 0,
+  "num_train_epochs": 2,
+  "save_steps": 500,
+  "total_flos": 0,
+  "train_batch_size": 32,
+  "trial_name": null,
+  "trial_params": {
+    "learning_rate": 2.8393438396163414e-06,
+    "num_train_epochs": 2,
+    "per_device_train_batch_size": 32,
+    "seed": 13
+  }
+}

run-0/checkpoint-4/training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5e596f388cb2b7e0d8e354607f2283aafb814732c6ae1ac8514e2f2ff4c3ec13
+size 4728

training_args.bin

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:1b31dee344632019f16b1936ecff2b45f7b14cecbf88bfc16b89929167aafc1a
+oid sha256:5e596f388cb2b7e0d8e354607f2283aafb814732c6ae1ac8514e2f2ff4c3ec13
 size 4728