---
license: gpl-3.0
---

This repository contains the dataset used in our [work](https://github.com/HemaxiN/3DVesselSegmentation).

* masks: contains the 2D segmentation masks;
* stl: contains the 3D masks obtained using [PolNet](https://github.com/mobernabeu/polnet);

* **Dataset 1**:

| **Image**        | **Size (X×Y×Z)** | **Train/Test** <br> **Split** |
| :--------------: | :--------------: | :-----------------------------: |
| PBS_new_ret1     | 5409×2979×31     | Train                           |
| PBS_new_ret1b    | 3375×4599×56     | Test                            |
| PBS_ret1-02      | 6237×3384×38     | Test                            |
| PBS_ret4         | 5013×2979×43     | Test                            |
| sFLT1_ret1       | 4617×5418×35     | Train                           |
| sFLT1_ret4       | 4365×3978×73     | Test                            |
| sFLT1_ret5       | 4365×3600×66     | Test                            |
| VEGF_ret1        | 2979×4599×42     | Train                           |
| VEGF_ret1b       | 5319×4878×61     | Test                            |
| VEGF_ret3        | 5427×4194×46     | Test                            |
| VEGF_ret7        | 5013×4194×38     | Test                            |
| AngII_ret1       | 6273×3780×33     | Train                           |
| AngII_ret2       | 4851×5571×42     | Test                            |
| AngII_retina_5   | 4838×5561×39     | Test                            |


* **Datasets 2, 3 and 4**:

|                | **Image**                       | **Size (X×Y×Z)** |
| :------------- | :------------------------------ | :--------------- |
| **Dataset 2**  | Captopril_new_Ret_1             | 4212×5427×35     |
|                | Captopril_new_Ret_2             | 4194×5013×34     |
|                | Captopril_new_Ret_3             | 4599×3789×36     |
|                | Captopril_ret4                  | 3206×3972×37     |
|                | Captopril_ret5_2                | 3204×4365×54     |
|                | Captopril_ret6                  | 3600×4365×60     |
|                | RGDS_2                          | 3553×4000×67     |
|                | RGDS_3                          | 2258×3997×42     |
|                | RGDS_4                          | 3555×4428×48     |
| **Dataset 3**  | FLIJ7_TG_stiching_1             | 4590×2160×27     |
|                | FLIJ7_TG_stiching_2ndExp_1      | 3384×5427×35     |
|                | FLIJ8_WT_stiching_2ndExp_1      | 4617×5427×35     |
|                | FLIJ9_TG_stiching_1             | 2709×5733×41     |
|                | FLIJ9_TG_stiching_2ndExp_1      | 3402×5445×35     |
|                | FLIO1a_TG_stiching_2ndExp_2     | 3388×2969×32     |
|                | FLIO1b_TG_stiching_2ndExp_1     | 3783×3375×43     |
|                | FLIO4_TG_stiching_2ndExp_1      | 3378×3787×28     |
|                | FLIO5_TG_stiching_2ndExp_1      | 5004×3798×27     |
|                | FLIO6_TG_stiching_1             | 4428×2700×40     |
|                | FLIO6_TG_stiching_2             | 4203×4212×31     |
|                | FLIO6_TG_stiching_3             | 4608×5022×44     |
|                | FLIO8_TG_stiching_1             | 5004×3798×38     |
|                | FLIP1_TG_stiching_1             | 4203×1764×23     |
|                | FLIP1_TG_stiching_1Exp_1        | 1954×4094×41     |
|                | FLIP1_TG_stiching_1Exp_2        | 3384×4815×34     |
|                | FLIP1_TG_stiching_1Exp_3        | 4815×3033×30     |
|                | FLIP1_TG_stiching_2             | 4608×5022×40     |
|                | FLIP5_WT_stiching_2ndExp_1      | 2565×4608×30     |
| **Dataset 4**  | YES_retinas_h_KO4_C1            | 5632×6656×36     |
|                | YES_retinas_b_WT2_C1            | 4608×4608×24     |
|                | YES_retinas_a_WT1_C1            | 4608×5632×20     |
|                | YES_retinas_f_KO2_C1            | 4608×5632×36     |
|                | YES_retinas_c_WT3_C1            | 4608×5632×24     |
|                | YES_retinas_g_KO3_C1            | 4608×4608×28     |
|                | YES_retinas_e_KO1_C1            | 4608×4608×32     |