tpierrot commited on
Commit
8425135
1 Parent(s): 6215e66

Update multi_species_genomes.py

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Files changed (1) hide show
  1. multi_species_genomes.py +8 -2
multi_species_genomes.py CHANGED
@@ -37,7 +37,11 @@ _CITATION = """\
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  # You can copy an official description
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  _DESCRIPTION = """\
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- Genomes from 850 different species.
 
 
 
 
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  """
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  _HOMEPAGE = "https://www.ncbi.nlm.nih.gov/"
@@ -111,6 +115,7 @@ class MultiSpeciesGenomes(datasets.GeneratorBasedBuilder):
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  "description": datasets.Value("string"),
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  "start_pos": datasets.Value("int32"),
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  "end_pos": datasets.Value("int32"),
 
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  }
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  )
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  return datasets.DatasetInfo(
@@ -174,6 +179,7 @@ class MultiSpeciesGenomes(datasets.GeneratorBasedBuilder):
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  'sequence': chunk_sequence,
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  'description': description,
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  'start_pos': start_pos,
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- 'end_pos': end_pos
 
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  }
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  key += 1
 
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  # You can copy an official description
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  _DESCRIPTION = """\
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+ Datset made of diverse genomes available on NCBI and coming from ~850 different species.
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+ Test and validation are made of 50 species each. The rest of the genomes are used for training.
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+ Default configuration "6kbp" yields chunks of 6.2kbp (100bp overlap on each side). Similarly,
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+ the "12kbp"configuration yields chunks of 12.2kbp. The chunks of DNA are cleaned and processed so that
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+ they can only contain the letters A, T, C, G and N.
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  """
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  _HOMEPAGE = "https://www.ncbi.nlm.nih.gov/"
 
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  "description": datasets.Value("string"),
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  "start_pos": datasets.Value("int32"),
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  "end_pos": datasets.Value("int32"),
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+ "fasta_url": datasets.Value("string")
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  }
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  )
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  return datasets.DatasetInfo(
 
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  'sequence': chunk_sequence,
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  'description': description,
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  'start_pos': start_pos,
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+ 'end_pos': end_pos.
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+ 'fasta_url': file + '.fna.gz'
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  }
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  key += 1