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otter_uniprot_bindingdb_chembl

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marmg commited on Jun 13, 2023

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@@ -8,6 +8,7 @@ UBC is a dataset comprising entities (Proteins/Drugs) from Uniprot (U), BindingD
 <div align="center">
   <img src="https://raw.githubusercontent.com/IBM/otter-knowledge/main/assets/neurips_ubc.png" alt="Overview of the creation of UBC"/>
 </div>
 ## Dataset details
 #### Uniprot
 Uniprot comprises of 573,227 proteins from SwissProt, which is the subset of manually curated entries within UniProt, including attributes with different modalities like the sequence (567,483 of them), full name, organism, protein family, description of its function, catalytics activity, pathways and its length. The number of edges are 38,665 of type \emph{target\_of} from Uniprot ids to both ChEMBL and Drugbank ids, and 196,133 interactants between Uniprot protein ids.

 <div align="center">
   <img src="https://raw.githubusercontent.com/IBM/otter-knowledge/main/assets/neurips_ubc.png" alt="Overview of the creation of UBC"/>
 </div>
 ## Dataset details
 #### Uniprot
 Uniprot comprises of 573,227 proteins from SwissProt, which is the subset of manually curated entries within UniProt, including attributes with different modalities like the sequence (567,483 of them), full name, organism, protein family, description of its function, catalytics activity, pathways and its length. The number of edges are 38,665 of type \emph{target\_of} from Uniprot ids to both ChEMBL and Drugbank ids, and 196,133 interactants between Uniprot protein ids.