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1 Parent(s): b3d9197

adding masks as well as column csv changes

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  1. BeetleMeasurements.csv +2 -2
  2. README.md +1 -1
  3. group_images_masks/A00000001831_mask.png +3 -0
  4. group_images_masks/A00000003356_mask.png +3 -0
  5. group_images_masks/A00000006924_mask.png +3 -0
  6. group_images_masks/A00000008914_mask.png +3 -0
  7. group_images_masks/A00000008915_mask.png +3 -0
  8. group_images_masks/A00000008916_mask.png +3 -0
  9. group_images_masks/A00000008918_mask.png +3 -0
  10. group_images_masks/A00000008920_mask.png +3 -0
  11. group_images_masks/A00000008921_mask.png +3 -0
  12. group_images_masks/A00000008937_mask.png +3 -0
  13. group_images_masks/A00000008952_mask.png +3 -0
  14. group_images_masks/A00000008962_mask.png +3 -0
  15. group_images_masks/A00000008976_mask.png +3 -0
  16. group_images_masks/A00000008978_mask.png +3 -0
  17. group_images_masks/A00000008980_mask.png +3 -0
  18. group_images_masks/A00000008981_mask.png +3 -0
  19. group_images_masks/A00000008984_mask.png +3 -0
  20. group_images_masks/A00000009015_mask.png +3 -0
  21. group_images_masks/A00000009083_mask.png +3 -0
  22. group_images_masks/A00000009143_mask.png +3 -0
  23. group_images_masks/A00000009149_mask.png +3 -0
  24. group_images_masks/A00000009160_mask.png +3 -0
  25. group_images_masks/A00000009162_mask.png +3 -0
  26. group_images_masks/A00000009164_mask.png +3 -0
  27. group_images_masks/A00000009166_mask.png +3 -0
  28. group_images_masks/A00000009167_mask.png +3 -0
  29. group_images_masks/A00000009168_mask.png +3 -0
  30. group_images_masks/A00000009170_mask.png +3 -0
  31. group_images_masks/A00000009171_mask.png +3 -0
  32. group_images_masks/A00000012427_mask.png +3 -0
  33. group_images_masks/A00000012429_mask.png +3 -0
  34. group_images_masks/A00000012430_mask.png +3 -0
  35. group_images_masks/A00000012431_mask.png +3 -0
  36. group_images_masks/A00000012432_mask.png +3 -0
  37. group_images_masks/A00000012433_mask.png +3 -0
  38. group_images_masks/A00000012434_mask.png +3 -0
  39. group_images_masks/A00000012435_mask.png +3 -0
  40. group_images_masks/A00000012436_mask.png +3 -0
  41. group_images_masks/A00000012920_mask.png +3 -0
  42. group_images_masks/A00000012923_mask.png +3 -0
  43. group_images_masks/A00000012924_mask.png +3 -0
  44. group_images_masks/A00000012961_mask.png +3 -0
  45. group_images_masks/A00000022058_mask.png +3 -0
  46. group_images_masks/A00000022093_mask.png +3 -0
  47. group_images_masks/A00000022146_mask.png +3 -0
  48. group_images_masks/A00000022197_mask.png +3 -0
  49. group_images_masks/A00000032878_mask.png +3 -0
  50. group_images_masks/A00000032879_mask.png +3 -0
BeetleMeasurements.csv CHANGED
@@ -1,3 +1,3 @@
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+ size 19544989
README.md CHANGED
@@ -104,7 +104,7 @@ The `individual_images` directory contains images of each individual segmented f
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  The `group_images` folder has all 577 orignal full size images. The `beetle_images_resized` folder has the resized (approximately 1MB) images used for annotation in Zooniverse (1MB was the size limitation imposed by the software); aspect ratio was maintained in the resize. <!-- >, and the code used can be found [here](). -->
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- Segmentation was completed by adapting the elytra length and width annotations to generate expected bounding boxes. [Segment Anything (SAM)]() was then used to segment the individual beetles. More information and the code for this process is provided in the [Imageomics/2018-NEON-beetles-processing repo](https://github.com/Imageomics/2018-NEON-beetles-processing).
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  |![picture of beetles in A00000046094](https://huggingface.co/datasets/imageomics/BeetlePalooza/resolve/main/group_images/A00000046094.jpg)|
 
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  The `group_images` folder has all 577 orignal full size images. The `beetle_images_resized` folder has the resized (approximately 1MB) images used for annotation in Zooniverse (1MB was the size limitation imposed by the software); aspect ratio was maintained in the resize. <!-- >, and the code used can be found [here](). -->
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+ Segmentation was completed by adapting the elytra length and width annotations to generate the xy point input for the [Segment Anything (SAM)]() model. [Segment Anything (SAM)]() was then used to segment the individual beetles. More information and the code for this process is provided in the [Imageomics/2018-NEON-beetles-processing repo](https://github.com/Imageomics/2018-NEON-beetles-processing).
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  |![picture of beetles in A00000046094](https://huggingface.co/datasets/imageomics/BeetlePalooza/resolve/main/group_images/A00000046094.jpg)|
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