Update README.md

README.md

@@ -95,13 +95,13 @@ cd otter-knowledge
 ```
 - Run the inference for Proteins:
   
-  *Replace test_data with the path to a CSV file containing the protein sequences, and name_of_the_column with the name of the column of the protein sequence in the CSV.*
+  *Replace test_data with the path to a CSV file containing the protein sequences, name_of_the_column with the name of the column of the protein sequence in the CSV and output_path with the filename of the JSON file to be created with the embeddings.*
 ```python
-python inference --test test_data  --sequence_column name_of_the_column --model_path ibm/otter_ubc_transe
+python inference.py --test test_data  --sequence_column name_of_the_column --model_path ibm/otter_ubc_transe --output_path output_path
 ```
 - Run the inference for Drugs:
 
-  *Replace test_data with the path to a CSV file containing the Drug SMILES, and name_of_the_column with the name of the column of the SMILES in the CSV.*
+  *Replace test_data with the path to a CSV file containing the Drug SMILES, name_of_the_column with the name of the column of the SMILES in the CSV and output_path with the filename of the JSON file to be created with the embeddings.*.*
 ```python
-python inference --test test_data --sequence_column name_of_the_column input_type Drug --relation_name smiles --model_path ibm/otter_ubc_transe 
+python inference.py --test test_data --sequence_column name_of_the_column input_type Drug --relation_name smiles --model_path ibm/otter_ubc_transe --output_path output_path
 ```