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import uvicorn
from fastapi import FastAPI
from fastapi.middleware.wsgi import WSGIMiddleware
from dash_plotly_QC_scRNA import app as dashboard1
#from app2 import app as dashboard2
#########################################################
import dash
from dash import dcc, html, Output, Input
import plotly.express as px
import dash_callback_chain
import yaml
import polars as pl
import os
pl.enable_string_cache(False)
# Set custom resolution for plots:
config_fig = {
'toImageButtonOptions': {
'format': 'svg',
'filename': 'custom_image',
'height': 600,
'width': 700,
'scale': 1,
}
}
from adlfs import AzureBlobFileSystem
mountpount=os.environ['AZURE_MOUNT_POINT'],
AZURE_STORAGE_ACCESS_KEY=os.getenv('AZURE_STORAGE_ACCESS_KEY')
AZURE_STORAGE_ACCOUNT=os.getenv('AZURE_STORAGE_ACCOUNT')
filepath = 'az://dataliu/sc_liu_umap_clusres_ctrl_03102023.parquet'
storage_options={'account_name': AZURE_STORAGE_ACCOUNT, 'account_key': AZURE_STORAGE_ACCESS_KEY,'anon': False}
#azfs = AzureBlobFileSystem(**storage_options )
df = pl.read_parquet(filepath,storage_options=storage_options)
# Load in config file
config_path = "./data/config.yaml"
# Add the read-in data from the yaml file
def read_config(filename):
with open(filename, 'r') as yaml_file:
config = yaml.safe_load(yaml_file)
return config
config = read_config(config_path)
#path_parquet = config.get("path_parquet")
conditions = config.get("conditions")
col_features = config.get("col_features")
col_counts = config.get("col_counts")
col_mt = config.get("col_mt")
#df = df.rename({"__index_level_0__": "Unnamed: 0"})
# Setup the app
external_stylesheets = ['https://codepen.io/chriddyp/pen/bWLwgP.css']
######################################################################
# Define the FastAPI server
# Mount the Dash app as a sub-application in the FastAPI server
#app.mount("/dashboard2", WSGIMiddleware(dashboard2.server))
app = FastAPI()
@app.get("/")
async def root():
return {"message": "Hello World"}
app.mount("/dashboard1", WSGIMiddleware(dashboard1.server))
# Added the following lines to demonstrate the usage of the /dashboard1 endpoint
@app.get("/dashboard1")
def serve_dashboard1():
# Return an index.html file as response content
return HTMLResponse(open('static/index.html', 'r').read())
# Start the FastAPI server
if __name__ == "__main__":
uvicorn.run(dashboard1, host="0.0.0.0", port=5000) |