Update dash_plotly_QC_scRNA.py

dash_plotly_QC_scRNA.py

@@ -34,6 +34,22 @@ storage_options={'account_name': AZURE_STORAGE_ACCOUNT, 'account_key': AZURE_STO
 df = pl.read_parquet(filepath,storage_options=storage_options)
 #abfs = AzureBlobFileSystem(account_name=accountname,account_key=accountkey)
 
+# Load in config file
+config_path = "./data/config.yaml"
+
+# Add the read-in data from the yaml file
+def read_config(filename):
+    with open(filename, 'r') as yaml_file:
+        config = yaml.safe_load(yaml_file)
+    return config
+
+config = read_config(config_path)
+#path_parquet = config.get("path_parquet")
+conditions = config.get("conditions")
+col_features = config.get("col_features")
+col_counts = config.get("col_counts")
+col_mt = config.get("col_mt")
+
 #df = df.rename({"__index_level_0__": "Unnamed: 0"})
 
 # Setup the app