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name: Build
on:
push:
branches:
- '*'
pull_request:
branches:
- '*'
workflow_dispatch:
jobs:
build:
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v1
- name: Set up Python 3.7
uses: actions/setup-python@v2
with:
python-version: 3.7
- name: Install dependencies
run: |
pip install --upgrade pip
pip install wheel setuptools
- name: Build wheel
run: python setup.py bdist_wheel --universal
- name: Upload Python wheel
uses: actions/upload-artifact@v2
with:
name: Python wheel
path: ${{github.workspace}}/dist/lungtumormask-*.whl
if-no-files-found: error
test:
needs: build
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [windows-2019, ubuntu-20.04, macos-10.15]
python-version: ["3.7", "3.8", "3.9", "3.10"]
steps:
- uses: actions/checkout@v1
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Download artifact
uses: actions/download-artifact@master
with:
name: "Python wheel"
- name: Install software
run: pip install --find-links=${{github.workspace}} lungtumormask
- name: Download test data
run: |
pip install --upgrade --no-cache-dir gdown
mkdir samples
cd samples
gdown --no-cookies https://drive.google.com/uc?id=1EBU130MSupgrux-VXz2i1tY2P6kKng5w
- name: Test CLI
run: lungtumormask --help
- name: Test inference
run: lungtumormask samples/lung_001.nii.gz mask_001.nii.gz --threshold 0.3 --lung-filter --radius 3
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