import torch as T import torch.nn as nn from Networks.network import Network from monai.networks.nets.unet import UNet class UNet_student(Network): def __init__(self): super(UNet_student, self).__init__() #self._build() self.model = T.nn.Sequential(UNet(3, 1, 1, (32, 64, 128, 256), (2, 2, 2)), T.nn.Sigmoid()) def forward(self, image): return self.model(image) def train_step(self, image, segment, criterion, segbox): fo = self.forward(image) loss = criterion(image, segment) return loss """ def forward(self, image, segbox = None, eval_mode = True): layer_0, layer_1, layer_2, layer_3 = self._analysis(image) inter_output, s_3, s_2, s_1 = self._synthesis(layer_0, layer_1, layer_2, layer_3, self._bridge(layer_3)) seg_out = self.output_0(inter_output) u_0 = self._upsample(s_3, s_2, s_1, inter_output) box_out = self.output_1(u_0) if (eval_mode): return seg_out return seg_out, box_out def train_step(self, image, segment, criterion, segbox = None): seg_out, box_out = self.forward(image, eval_mode=False) seg_loss = criterion(seg_out, segment) box_loss = criterion(box_out, segbox) return seg_loss + box_loss def _analysis(self, x): layer_0 = self.analysis_0(x) layer_1 = self.analysis_1(layer_0) layer_2 = self.analysis_2(layer_1) layer_3 = self.analysis_3(layer_2) return layer_0, layer_1, layer_2, layer_3 def _bridge(self, layer_3): return self.bridge(layer_3) def _synthesis(self, l0, l1, l2, l3, l4): c_3 = T.cat((l3, l4), dim = 1) s_3 = self.synthesis_3(c_3) c_2 = T.cat((l2, self.up_conv_3(s_3)), dim = 1) s_2 = self.synthesis_2(c_2) c_1 = T.cat((l1, self.up_conv_2(s_2)), dim = 1) s_1 = self.synthesis_1(c_1) c_0 = T.cat((l0, self.up_conv_1(s_1)), dim = 1) return self.synthesis_0(c_0), s_3, s_2, s_1 def _upsample(self, s_3, s_2, s_1, inter): u_3 = self.up_sample_3(s_3) u_2 = self.up_sample_2(s_2) u_1 = self.up_sample_1(s_1) return T.cat((u_3, u_2, u_1, inter), dim = 1) def _build(self): self.analysis_0 = nn.Sequential( nn.Conv3d(1, 16, 3, 1, 1), nn.BatchNorm3d(16), nn.LeakyReLU(), nn.Conv3d(16, 24, 3, 1, 1), nn.BatchNorm3d(24), nn.LeakyReLU(), ) self.analysis_1 = nn.Sequential( nn.MaxPool3d(2), nn.Conv3d(24, 40, 3, 1, 1), nn.BatchNorm3d(40), nn.LeakyReLU(), nn.Conv3d(40, 48, 3, 1, 1), nn.BatchNorm3d(48), nn.LeakyReLU(), ) self.analysis_2 = nn.Sequential( nn.MaxPool3d(2), nn.Conv3d(48, 64, 3, 1, 1), nn.BatchNorm3d(64), nn.LeakyReLU(), nn.Conv3d(64, 86, 3, 1, 1), nn.BatchNorm3d(86), nn.LeakyReLU(), ) self.analysis_3 = nn.Sequential( nn.MaxPool3d(2), nn.Conv3d(86, 110, 3, 1, 1), nn.BatchNorm3d(110), nn.LeakyReLU(), nn.Conv3d(110, 128, 3, 1, 1), nn.BatchNorm3d(128), nn.LeakyReLU(), ) self.bridge = nn.Sequential( nn.MaxPool3d(2), nn.Conv3d(128, 128, 3, 1, 1), nn.BatchNorm3d(128), nn.LeakyReLU(), nn.Conv3d(128, 128, 3, 1, 1), nn.BatchNorm3d(128), nn.LeakyReLU(), nn.ConvTranspose3d(128, 128, 2, 2, 0), ) self.synthesis_3 = nn.Sequential( nn.Conv3d(128 + 128, 110, 3, 1, 1), nn.BatchNorm3d(110), nn.LeakyReLU(), nn.Conv3d(110, 86, 3, 1, 1), nn.BatchNorm3d(86), nn.LeakyReLU(), ) self.synthesis_2 = nn.Sequential( nn.Conv3d(86 + 86, 64, 3, 1, 1), nn.BatchNorm3d(64), nn.LeakyReLU(), nn.Conv3d(64, 48, 3, 1, 1), nn.BatchNorm3d(48), nn.LeakyReLU(), ) self.synthesis_1 = nn.Sequential( nn.Conv3d(48 + 48, 40, 3, 1, 1), nn.BatchNorm3d(40), nn.LeakyReLU(), nn.Conv3d(40, 24, 3, 1, 1), nn.BatchNorm3d(24), nn.LeakyReLU(), ) self.up_conv_3 = nn.Sequential( nn.ConvTranspose3d(86, 86, 2, 2, 0), ) self.up_conv_2 = nn.Sequential( nn.ConvTranspose3d(48, 48, 2, 2, 0), ) self.up_conv_1 = nn.Sequential( nn.ConvTranspose3d(24, 24, 2, 2, 0), ) self.synthesis_0 = nn.Sequential( nn.Conv3d(24 + 24, 16, 3, 1, 1), nn.BatchNorm3d(16), nn.LeakyReLU(), nn.Conv3d(16, 16, 3, 1, 1), nn.BatchNorm3d(16), nn.LeakyReLU(), ) self.output_0 = nn.Sequential( nn.Conv3d(16, 8, 3, 1, 1), nn.BatchNorm3d(8), nn.LeakyReLU(), nn.Conv3d(8, 1, 3, 1, 1), nn.Sigmoid() ) self.up_sample_3 = nn.Sequential( nn.ConvTranspose3d(86, 32, 8, 8, 0), ) self.up_sample_2 = nn.Sequential( nn.ConvTranspose3d(48, 16, 4, 4, 0), ) self.up_sample_1 = nn.Sequential( nn.ConvTranspose3d(24, 8, 2, 2, 0), ) self.output_1 = nn.Sequential( nn.Conv3d(72, 64, 3, 1, 1), nn.BatchNorm3d(64), nn.LeakyReLU(), nn.Conv3d(64, 64, 3, 1, 1), nn.BatchNorm3d(64), nn.LeakyReLU(), nn.Conv3d(64, 32, 3, 1, 1), nn.BatchNorm3d(32), nn.LeakyReLU(), nn.Conv3d(32, 1, 3, 1, 1), nn.Sigmoid() ) """