hlnicholls commited on
Commit
cfb90d5
1 Parent(s): 5e24005

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +2 -3
app.py CHANGED
@@ -29,8 +29,7 @@ xgb = xgboost.XGBRegressor(
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  reg_alpha=1,
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  reg_lambda=1,
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  random_state=seed,
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- objective="reg:squarederror",
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- )
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  xgb.fit(X, Y)
@@ -69,7 +68,6 @@ def convert_df(df):
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  if len(gene_list) > 1:
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  df = df_total[df_total.index.isin(gene_list)]
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  st.dataframe(df)
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- df_shap = df
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  df['Gene'] = df.index
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  output = df[['Gene', 'XGB_Score']]
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  csv = convert_df(output)
@@ -80,6 +78,7 @@ if len(gene_list) > 1:
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  "text/csv",
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  key='download-csv'
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  )
 
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  df_shap.drop(columns='XGB_Score', inplace=True)
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  shap_values = explainer.shap_values(df_shap)
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  summary_plot = shap.summary_plot(shap_values, df_shap, show=False)
 
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  reg_alpha=1,
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  reg_lambda=1,
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  random_state=seed,
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+ objective="reg:squarederror")
 
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  xgb.fit(X, Y)
 
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  if len(gene_list) > 1:
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  df = df_total[df_total.index.isin(gene_list)]
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  st.dataframe(df)
 
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  df['Gene'] = df.index
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  output = df[['Gene', 'XGB_Score']]
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  csv = convert_df(output)
 
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  "text/csv",
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  key='download-csv'
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  )
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+ df_shap = df_total[df_total.index.isin(gene_list)]
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  df_shap.drop(columns='XGB_Score', inplace=True)
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  shap_values = explainer.shap_values(df_shap)
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  summary_plot = shap.summary_plot(shap_values, df_shap, show=False)