Update app.py
Browse files
app.py
CHANGED
@@ -30,7 +30,7 @@ def generate_caption(protein, prompt):
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# os.system("python esm_scripts/extract.py esm2_t36_3B_UR50D /home/user/app/example.fasta /home/user/app --repr_layers 36 --truncation_seq_length 1024 --include per_tok")
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esm_emb = run_demo(protein_name='protein_name', protein_seq=protein,
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model=model_esm, alphabet=alphabet,
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include='per_tok', repr_layers=36, truncation_seq_length=1024)
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print("esm embedding generated")
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esm_emb = F.pad(esm_emb.t(), (0, 1024 - len(esm_emb))).t().to('cuda')
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print("esm embedding processed")
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# os.system("python esm_scripts/extract.py esm2_t36_3B_UR50D /home/user/app/example.fasta /home/user/app --repr_layers 36 --truncation_seq_length 1024 --include per_tok")
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esm_emb = run_demo(protein_name='protein_name', protein_seq=protein,
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model=model_esm, alphabet=alphabet,
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include='per_tok', repr_layers=[36], truncation_seq_length=1024)
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print("esm embedding generated")
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esm_emb = F.pad(esm_emb.t(), (0, 1024 - len(esm_emb))).t().to('cuda')
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print("esm embedding processed")
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