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# Copyright (c) 2022, salesforce.com, inc.
# All rights reserved.
# SPDX-License-Identifier: BSD-3-Clause
# For full license text, see the LICENSE file in the repo root or https://opensource.org/licenses/BSD-3-Clause
model:
arch: blip2_protein_opt
model_type: pretrain_protein_opt2.7b
load_pretrained: True
# intialize stage 2 pretraining from stage 1 pretrained model
# pretrained: "/home/nilin/LAVIS/lavis/output/BLIP2/Pretrain_stage2/GO_completed/checkpoint_54.pth"
pretrained: "/cluster/home/wenkai/LAVIS/lavis/output/BLIP2/Pretrain_stage2/20230924220/checkpoint_5.pth"
use_grad_checkpoint: True
freeze_vit: False
max_protein_len: 600
max_txt_len: 25
datasets:
GO_protein_function:
text_processor:
train:
name: "blip_caption"
run:
task: captioning
# optimizer
lr_sched: "linear_warmup_cosine_lr"
init_lr: 1e-5
min_lr: 0
warmup_lr: 1e-8
warmup_steps: 1000
weight_decay: 0.05
max_epoch: 5
batch_size_train: 4
batch_size_eval: 4
num_workers: 8
accum_grad_iters: 1
max_len: 25
min_len: 1
num_beams: 5
seed: 42
output_dir: "output/BLIP2/Function_reviewed"
amp: True
resume_ckpt_path: null
evaluate: False
train_splits: ["train"]
valid_splits: ["val"]
test_splits: ["test"]
device: "cuda"
world_size: 1
dist_url: "env://"
distributed: True
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