use conda to solve conflicts in installation

#67
by Billsfriend - opened
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  1. README.md +1 -1
README.md CHANGED
@@ -27,7 +27,7 @@ In addition to the pretrained model, contained herein are functions for tokenizi
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  ```bash
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  git clone https://huggingface.co/ctheodoris/Geneformer
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  cd Geneformer
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- pip install .
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  ```
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  For usage, see [examples](https://huggingface.co/ctheodoris/Geneformer/tree/main/examples) for tokenizing, pretraining, fine-tuning, hyperparameter tuning, and in silico perturbation. Please note that the fine-tuning examples are meant to be generally applicable and the input datasets and labels will vary dependent on the downstream task. Example input files for a few of the downstream tasks demonstrated in the manuscript are located within the [example_input_files directory](https://huggingface.co/datasets/ctheodoris/Genecorpus-30M/tree/main/example_input_files) in the dataset repository, but these only represent a few example fine-tuning applications.
 
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  ```bash
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  git clone https://huggingface.co/ctheodoris/Geneformer
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  cd Geneformer
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+ conda install loompy numpy datasets transformers
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  ```
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  For usage, see [examples](https://huggingface.co/ctheodoris/Geneformer/tree/main/examples) for tokenizing, pretraining, fine-tuning, hyperparameter tuning, and in silico perturbation. Please note that the fine-tuning examples are meant to be generally applicable and the input datasets and labels will vary dependent on the downstream task. Example input files for a few of the downstream tasks demonstrated in the manuscript are located within the [example_input_files directory](https://huggingface.co/datasets/ctheodoris/Genecorpus-30M/tree/main/example_input_files) in the dataset repository, but these only represent a few example fine-tuning applications.