use conda to solve conflicts in installation
#67
by
Billsfriend
- opened
README.md
CHANGED
@@ -27,7 +27,7 @@ In addition to the pretrained model, contained herein are functions for tokenizi
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```bash
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git clone https://huggingface.co/ctheodoris/Geneformer
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cd Geneformer
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-
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```
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For usage, see [examples](https://huggingface.co/ctheodoris/Geneformer/tree/main/examples) for tokenizing, pretraining, fine-tuning, hyperparameter tuning, and in silico perturbation. Please note that the fine-tuning examples are meant to be generally applicable and the input datasets and labels will vary dependent on the downstream task. Example input files for a few of the downstream tasks demonstrated in the manuscript are located within the [example_input_files directory](https://huggingface.co/datasets/ctheodoris/Genecorpus-30M/tree/main/example_input_files) in the dataset repository, but these only represent a few example fine-tuning applications.
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```bash
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git clone https://huggingface.co/ctheodoris/Geneformer
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cd Geneformer
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conda install loompy numpy datasets transformers
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```
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For usage, see [examples](https://huggingface.co/ctheodoris/Geneformer/tree/main/examples) for tokenizing, pretraining, fine-tuning, hyperparameter tuning, and in silico perturbation. Please note that the fine-tuning examples are meant to be generally applicable and the input datasets and labels will vary dependent on the downstream task. Example input files for a few of the downstream tasks demonstrated in the manuscript are located within the [example_input_files directory](https://huggingface.co/datasets/ctheodoris/Genecorpus-30M/tree/main/example_input_files) in the dataset repository, but these only represent a few example fine-tuning applications.
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