| ## File description for: Mesculenta_305_v6_PROseq_ISM_LOG2FC.txt.gz | |
| Intergenic enhancer regions based on Lozano et al. 2021 (https://pubmed.ncbi.nlm.nih.gov/34499719/) <br> | |
| Genome version: Manihot esculenta reference genome v6.1 from Phytozome <br> | |
| CHR: Chromosome <br> | |
| POS: Physical position (bp) <br> | |
| REF: Reference allele <br> | |
| ALT: Alternative allele <br> | |
| LOG2FC: Log fold change in Intergenic enhancer probability (log2(p_mutated_sequence / p_original_sequence)) <br> | |
| ## File description for: Mesculenta_v6_GeneExpression_ISM_LOG2FC.txt.gz | |
| Gene expression prediction based on: Wilson et al. 2016 (https://pubmed.ncbi.nlm.nih.gov/28116755/) <br> | |
| Genome version: Manihot esculenta reference genome v6 from Ensembl 56 <br> | |
| CHR: Chromosome <br> | |
| POS: Physical position (bp) <br> | |
| REF: Reference allele <br> | |
| ALT: Alternative allele <br> | |
| GENE: Gene ID <br> | |
| STRAND: Gene strand <br> | |
| TISSUE: Tissue type (Acronyms detailed in Figure 1 of Wilson et al.) <br> | |
| LOG2FC: Gene expression log fold change (log2(gene_exp_mutated_sequence / gene_exp_original_sequence)) <br> |