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songlab
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gpn-msa-sapiens

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Transformers
PyTorch
GPNRoFormer
dna
language-model
variant-effect-prediction
biology
genomics
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GPN-MSA trained on humans and 89 other vertebrates

For more information check out our paper and repository.

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import gpn.model
from transformers import AutoModelForMaskedLM

model = AutoModelForMaskedLM.from_pretrained("songlab/gpn-msa-sapiens")

Hyperparameters

multiz100way/89/128/64/True/defined.phastCons.percentile-75_0.05_0.001/medium/0.1/42/30000/True/True/True

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